Variant report

Variant	rs6049548
Chromosome Location	chr20:24229557-24229558
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs28778436	0.83[EUR][1000 genomes]
rs41282312	0.83[EUR][1000 genomes]
rs41282314	0.83[EUR][1000 genomes]
rs41282316	0.83[EUR][1000 genomes]
rs55739770	0.90[EUR][1000 genomes]
rs56104572	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59054030	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59561448	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036707	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6036709	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6049549	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6049550	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6049553	1.00[ASN][1000 genomes]
rs6049554	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049555	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049556	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049557	1.00[ASN][1000 genomes]
rs6049561	1.00[ASN][1000 genomes]
rs6049564	1.00[ASN][1000 genomes]
rs6076194	1.00[CEU][hapmap]
rs6076195	0.90[EUR][1000 genomes]
rs6076205	0.90[EUR][1000 genomes]
rs6076214	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6076217	0.90[EUR][1000 genomes]
rs6083400	1.00[CEU][hapmap]
rs6083406	0.90[EUR][1000 genomes]
rs6083408	0.90[EUR][1000 genomes]
rs6083409	0.90[EUR][1000 genomes]
rs6083424	0.83[EUR][1000 genomes]
rs6083430	1.00[CEU][hapmap]
rs6083431	1.00[CEU][hapmap]
rs6083432	0.83[EUR][1000 genomes]
rs6083433	0.83[EUR][1000 genomes]
rs6083438	0.90[EUR][1000 genomes]
rs6083439	0.87[EUR][1000 genomes]
rs6083441	0.90[EUR][1000 genomes]
rs6083449	0.90[EUR][1000 genomes]
rs6083452	0.90[EUR][1000 genomes]
rs6083463	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083464	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083465	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083467	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083473	0.90[EUR][1000 genomes]
rs6083480	0.83[EUR][1000 genomes]
rs6106812	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6106813	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73329997	0.90[EUR][1000 genomes]
rs73333779	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73335617	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7354351	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv833945	chr20:24163437-24349462	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24229400-24229600	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:24229400-24229600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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