Variant report

Variant	rs6076205
Chromosome Location	chr20:24215001-24215002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:24214981-24215183	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
RNU1-23P	TF binding region

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs28778436	0.93[EUR][1000 genomes]
rs41282312	0.93[EUR][1000 genomes]
rs41282314	0.93[EUR][1000 genomes]
rs41282316	0.93[EUR][1000 genomes]
rs55739770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55771985	0.83[EUR][1000 genomes]
rs56104572	0.96[EUR][1000 genomes]
rs59054030	0.96[EUR][1000 genomes]
rs59561448	0.96[EUR][1000 genomes]
rs6049548	0.90[EUR][1000 genomes]
rs6049554	0.93[EUR][1000 genomes]
rs6049555	0.96[EUR][1000 genomes]
rs6049556	0.96[EUR][1000 genomes]
rs6076190	0.83[EUR][1000 genomes]
rs6076194	0.83[EUR][1000 genomes]
rs6076195	0.86[EUR][1000 genomes]
rs6076214	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6076217	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6083388	0.83[EUR][1000 genomes]
rs6083390	0.83[EUR][1000 genomes]
rs6083391	0.83[EUR][1000 genomes]
rs6083398	0.83[EUR][1000 genomes]
rs6083400	0.83[EUR][1000 genomes]
rs6083404	0.86[EUR][1000 genomes]
rs6083406	0.86[EUR][1000 genomes]
rs6083408	0.86[EUR][1000 genomes]
rs6083409	0.86[EUR][1000 genomes]
rs6083424	0.93[EUR][1000 genomes]
rs6083432	0.93[EUR][1000 genomes]
rs6083433	0.93[EUR][1000 genomes]
rs6083436	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6083438	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6083439	0.97[EUR][1000 genomes]
rs6083441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6083449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6083452	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6083463	0.96[EUR][1000 genomes]
rs6083464	0.96[EUR][1000 genomes]
rs6083465	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6083467	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6083473	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6083480	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6083484	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6083486	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6083487	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6083488	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6106813	0.96[EUR][1000 genomes]
rs73329997	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73333779	0.96[EUR][1000 genomes]
rs73335617	0.96[EUR][1000 genomes]
rs7354351	0.93[EUR][1000 genomes]
rs962527	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv833945	chr20:24163437-24349462	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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