Variant report

Variant	rs6083438
Chromosome Location	chr20:24193362-24193363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs12373871	1.00[ASN][1000 genomes]
rs28778436	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41282312	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41282314	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41282316	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55739770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55771985	0.83[EUR][1000 genomes]
rs56104572	0.96[EUR][1000 genomes]
rs59054030	0.96[EUR][1000 genomes]
rs59561448	0.96[EUR][1000 genomes]
rs6049548	0.90[EUR][1000 genomes]
rs6049554	0.93[EUR][1000 genomes]
rs6049555	0.96[EUR][1000 genomes]
rs6049556	0.96[EUR][1000 genomes]
rs6076190	0.83[EUR][1000 genomes]
rs6076194	0.83[EUR][1000 genomes]
rs6076195	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6076200	1.00[ASN][1000 genomes]
rs6076205	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6076206	1.00[ASN][1000 genomes]
rs6076214	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6076217	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6083388	0.83[EUR][1000 genomes]
rs6083390	0.83[EUR][1000 genomes]
rs6083391	0.83[EUR][1000 genomes]
rs6083398	0.83[EUR][1000 genomes]
rs6083400	0.83[EUR][1000 genomes]
rs6083404	0.86[EUR][1000 genomes]
rs6083406	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083408	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083409	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083424	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083432	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083433	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083436	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6083439	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083440	1.00[ASN][1000 genomes]
rs6083441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083452	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6083463	0.96[EUR][1000 genomes]
rs6083464	0.96[EUR][1000 genomes]
rs6083465	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6083467	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6083473	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6083480	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6083484	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6083486	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6083487	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6083488	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6106813	0.96[EUR][1000 genomes]
rs73329997	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73333779	0.96[EUR][1000 genomes]
rs73335617	0.96[EUR][1000 genomes]
rs73337581	1.00[ASN][1000 genomes]
rs7354351	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs962527	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv833945	chr20:24163437-24349462	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24190400-24196000	Enhancers	Fetal Intestine Large	intestine
2	chr20:24191800-24194200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr20:24192000-24195600	Enhancers	Fetal Intestine Small	intestine
4	chr20:24192200-24193600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr20:24192200-24193800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr20:24192200-24193800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr20:24192200-24194000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr20:24192200-24194000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr20:24192200-24194000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr20:24192400-24194000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr20:24192600-24194000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr20:24192600-24194000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr20:24192600-24194200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr20:24192800-24193600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr20:24193000-24193400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr20:24193000-24193400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr20:24193000-24193800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr20:24193200-24193400	Enhancers	H9 Cell Line	embryonic stem cell
19	chr20:24193200-24193600	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
20	chr20:24193200-24193600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr20:24193200-24193600	Bivalent Enhancer	Fetal Thymus	thymus
22	chr20:24193200-24193600	Bivalent Enhancer	Thymus	Thymus
23	chr20:24193200-24193800	Flanking Active TSS	Primary hematopoietic stem cells	blood
24	chr20:24193200-24196800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links