Variant report

Variant	rs6083480
Chromosome Location	chr20:24284457-24284458
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:24284170..24284741-chr20:24580499..24581174,2	MCF-7	breast:
2	chr20:24284269..24286790-chr20:24295761..24298544,3	MCF-7	breast:
3	chr20:24283824..24284530-chr20:24761681..24762698,3	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs28778436	0.85[EUR][1000 genomes]
rs41282312	0.85[EUR][1000 genomes]
rs41282314	0.85[EUR][1000 genomes]
rs41282316	0.85[EUR][1000 genomes]
rs55739770	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56104572	0.89[EUR][1000 genomes]
rs59054030	0.89[EUR][1000 genomes]
rs59561448	0.89[EUR][1000 genomes]
rs6036718	1.00[ASN][1000 genomes]
rs6036731	1.00[ASN][1000 genomes]
rs6049548	0.83[EUR][1000 genomes]
rs6049554	0.86[EUR][1000 genomes]
rs6049555	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6049556	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6049566	1.00[ASN][1000 genomes]
rs6049567	1.00[ASN][1000 genomes]
rs6049568	1.00[ASN][1000 genomes]
rs6049572	1.00[ASN][1000 genomes]
rs6049573	1.00[ASN][1000 genomes]
rs6076205	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6076214	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6076217	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083424	0.85[EUR][1000 genomes]
rs6083432	0.85[EUR][1000 genomes]
rs6083433	0.85[EUR][1000 genomes]
rs6083436	0.83[AMR][1000 genomes]
rs6083438	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6083439	0.83[EUR][1000 genomes]
rs6083441	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6083449	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6083452	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6083463	0.89[EUR][1000 genomes]
rs6083464	0.89[EUR][1000 genomes]
rs6083465	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6083467	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6083473	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083481	1.00[ASN][1000 genomes]
rs6083484	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083486	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083487	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083488	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6106813	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73329997	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73333779	0.82[EUR][1000 genomes]
rs73335617	0.89[EUR][1000 genomes]
rs7354351	0.85[EUR][1000 genomes]
rs962527	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv833945	chr20:24163437-24349462	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24284000-24284600	Enhancers	Brain Cingulate Gyrus	brain
2	chr20:24284000-24284600	Enhancers	Brain Hippocampus Middle	brain

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