Variant report
| Variant | rs6049566 |
|---|---|
| Chromosome Location | chr20:24262650-24262651 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr20:24256740..24259048-chr20:24262534..24264205,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs6036707 | 0.81[EUR][1000 genomes] |
| rs6036709 | 0.85[EUR][1000 genomes] |
| rs6036718 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6036731 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6049549 | 0.81[EUR][1000 genomes] |
| rs6049550 | 0.81[EUR][1000 genomes] |
| rs6049553 | 0.85[EUR][1000 genomes] |
| rs6049557 | 0.96[EUR][1000 genomes] |
| rs6049561 | 0.96[EUR][1000 genomes] |
| rs6049562 | 0.96[EUR][1000 genomes] |
| rs6049564 | 0.85[EUR][1000 genomes] |
| rs6049567 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6049568 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6049572 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6049573 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6076217 | 1.00[ASN][1000 genomes] |
| rs6083473 | 1.00[ASN][1000 genomes] |
| rs6083480 | 1.00[ASN][1000 genomes] |
| rs6083481 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6083484 | 1.00[ASN][1000 genomes] |
| rs6083486 | 1.00[ASN][1000 genomes] |
| rs6083487 | 1.00[ASN][1000 genomes] |
| rs6083488 | 1.00[ASN][1000 genomes] |
| rs6106812 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv9793 | chr20:23939613-24734850 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | esv3328348 | chr20:24095746-24285830 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv833945 | chr20:24163437-24349462 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv1058146 | chr20:24210196-24531087 | Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:24261600-24264600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
