Variant report

Variant	rs6049568
Chromosome Location	chr20:24270442-24270443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs6036707	0.81[EUR][1000 genomes]
rs6036709	0.85[EUR][1000 genomes]
rs6036718	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036731	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049549	0.81[EUR][1000 genomes]
rs6049550	0.81[EUR][1000 genomes]
rs6049553	0.85[EUR][1000 genomes]
rs6049557	0.96[EUR][1000 genomes]
rs6049561	0.96[EUR][1000 genomes]
rs6049562	0.96[EUR][1000 genomes]
rs6049564	0.85[EUR][1000 genomes]
rs6049566	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049567	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049572	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049573	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6076217	1.00[ASN][1000 genomes]
rs6083473	1.00[ASN][1000 genomes]
rs6083480	1.00[ASN][1000 genomes]
rs6083481	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083484	1.00[ASN][1000 genomes]
rs6083486	1.00[ASN][1000 genomes]
rs6083487	1.00[ASN][1000 genomes]
rs6083488	1.00[ASN][1000 genomes]
rs6106812	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv833945	chr20:24163437-24349462	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24270000-24270600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr20:24270000-24270600	Enhancers	Primary T cells from cord blood	blood
3	chr20:24270000-24270600	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr20:24270000-24270800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr20:24270000-24271000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr20:24270000-24271600	Flanking Active TSS	Dnd41	blood
7	chr20:24270200-24271200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr20:24270200-24271600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr20:24270200-24271600	Enhancers	Primary T cells fromperipheralblood	blood
10	chr20:24270200-24271600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr20:24270200-24271600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr20:24270200-24271800	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr20:24270200-24271800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr20:24270200-24271800	Enhancers	Fetal Thymus	thymus
15	chr20:24270200-24272000	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr20:24270200-24272000	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr20:24270400-24270600	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr20:24270400-24270800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
19	chr20:24270400-24272400	Enhancers	Primary neutrophils fromperipheralblood	blood

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