Variant report

Variant	rs6083398
Chromosome Location	chr20:24124374-24124375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs28778436	0.90[EUR][1000 genomes]
rs41282312	0.90[EUR][1000 genomes]
rs41282314	0.90[EUR][1000 genomes]
rs41282316	0.90[EUR][1000 genomes]
rs55739770	0.83[EUR][1000 genomes]
rs55771985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049396	0.87[EUR][1000 genomes]
rs6049397	0.87[EUR][1000 genomes]
rs6049401	0.87[EUR][1000 genomes]
rs6049405	0.87[EUR][1000 genomes]
rs6049406	0.87[EUR][1000 genomes]
rs6049407	0.87[EUR][1000 genomes]
rs6049408	0.87[EUR][1000 genomes]
rs6049409	0.87[EUR][1000 genomes]
rs6049411	0.87[EUR][1000 genomes]
rs6076184	1.00[ASN][1000 genomes]
rs6076185	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6076187	0.87[EUR][1000 genomes]
rs6076190	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6076194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6076195	0.83[EUR][1000 genomes]
rs6076205	0.83[EUR][1000 genomes]
rs6083374	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083375	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083376	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6083378	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083379	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083382	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083383	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083384	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6083386	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083388	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083390	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083391	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083400	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083404	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083406	0.83[EUR][1000 genomes]
rs6083408	0.83[EUR][1000 genomes]
rs6083409	0.83[EUR][1000 genomes]
rs6083424	0.90[EUR][1000 genomes]
rs6083432	0.90[EUR][1000 genomes]
rs6083433	0.90[EUR][1000 genomes]
rs6083438	0.83[EUR][1000 genomes]
rs6083439	0.80[EUR][1000 genomes]
rs6083441	0.83[EUR][1000 genomes]
rs6083449	0.83[EUR][1000 genomes]
rs6083452	0.83[EUR][1000 genomes]
rs73095459	1.00[ASN][1000 genomes]
rs73329997	0.83[EUR][1000 genomes]
rs7354351	0.90[EUR][1000 genomes]
rs8115661	0.87[EUR][1000 genomes]
rs962527	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2755330	chr20:24114903-24130700	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24123400-24130800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr20:24123800-24125000	Enhancers	Esophagus	oesophagus
3	chr20:24123800-24127400	Enhancers	Primary T cells fromperipheralblood	blood
4	chr20:24124200-24124400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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