Variant report

Variant	rs6083386
Chromosome Location	chr20:24097086-24097087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24092580..24094161-chr20:24096209..24099117,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs28778436	0.83[EUR][1000 genomes]
rs41282312	0.83[EUR][1000 genomes]
rs41282314	0.83[EUR][1000 genomes]
rs41282316	0.83[EUR][1000 genomes]
rs55771985	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049396	0.93[EUR][1000 genomes]
rs6049397	0.93[EUR][1000 genomes]
rs6049401	0.93[EUR][1000 genomes]
rs6049405	0.93[EUR][1000 genomes]
rs6049406	0.93[EUR][1000 genomes]
rs6049407	0.93[EUR][1000 genomes]
rs6049408	0.93[EUR][1000 genomes]
rs6049409	0.93[EUR][1000 genomes]
rs6049411	0.93[EUR][1000 genomes]
rs6076184	1.00[ASN][1000 genomes]
rs6076185	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6076187	0.93[EUR][1000 genomes]
rs6076190	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6076194	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083375	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6083378	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083379	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083382	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6083388	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083390	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083391	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083398	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083400	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083404	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6083424	0.83[EUR][1000 genomes]
rs6083432	0.83[EUR][1000 genomes]
rs6083433	0.83[EUR][1000 genomes]
rs73095459	1.00[ASN][1000 genomes]
rs7354351	0.83[EUR][1000 genomes]
rs8115661	0.93[EUR][1000 genomes]
rs962527	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24094400-24098400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:24095000-24098200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr20:24096400-24098000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr20:24096400-24098200	Weak transcription	HUVEC	blood vessel
5	chr20:24096600-24097800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr20:24097000-24097200	Enhancers	Fetal Stomach	stomach
7	chr20:24097000-24098200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr20:24097000-24100000	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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