Variant report

Variant	rs12386539
Chromosome Location	chr6:33923055-33923056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12386552	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6930171	0.93[ASN][1000 genomes]
rs73402405	1.00[AMR][1000 genomes]
rs73402407	1.00[AMR][1000 genomes]
rs73402410	1.00[AMR][1000 genomes]
rs73420648	1.00[AMR][1000 genomes]
rs7740698	0.86[AMR][1000 genomes]
rs7748059	1.00[EUR][1000 genomes]
rs9296109	1.00[AMR][1000 genomes]
rs9469652	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9688730	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462899	chr6:33880480-33944014	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv602841	chr6:33880480-33944014	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv5252	chr6:33919447-33955380	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33918800-33924400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:33919200-33926200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:33919600-33925400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:33920600-33925400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:33921000-33925400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:33922600-33924000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:33922600-33924200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:33922600-33925400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:33922800-33925400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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