Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:33919250..33921645-chr6:33946559..33949108,2	K562	blood:
2	chr6:33919883..33922480-chr6:33924256..33927487,4	MCF-7	breast:
3	chr6:33913064..33919897-chr6:33920862..33926806,7	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12386539	1.00[AMR][1000 genomes]
rs12386552	1.00[AMR][1000 genomes]
rs73402407	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73402410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73402422	0.90[EUR][1000 genomes]
rs73420621	0.90[EUR][1000 genomes]
rs73420643	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73420644	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73420647	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73420648	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740698	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9296106	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9296107	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9296109	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9469641	0.90[EUR][1000 genomes]
rs9469642	0.90[EUR][1000 genomes]
rs9469643	0.90[EUR][1000 genomes]
rs9469645	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9469648	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9469649	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462899	chr6:33880480-33944014	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv602841	chr6:33880480-33944014	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv5252	chr6:33919447-33955380	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33918800-33924400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:33919200-33926200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:33919600-33922200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:33919600-33925400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:33920600-33921400	Enhancers	Fetal Brain Male	brain
6	chr6:33920600-33925400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:33920800-33922200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:33921000-33925400	Weak transcription	H1 Cell Line	embryonic stem cell

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