Variant report

Variant	rs7740698
Chromosome Location	chr6:33904769-33904770
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12386539	0.86[AMR][1000 genomes]
rs12386552	0.86[AMR][1000 genomes]
rs73402405	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73402407	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73402410	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73420621	0.82[EUR][1000 genomes]
rs73420648	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9296109	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9469640	1.00[EUR][1000 genomes]
rs9469641	0.82[EUR][1000 genomes]
rs9469642	0.82[EUR][1000 genomes]
rs9469643	0.82[EUR][1000 genomes]
rs9469648	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462899	chr6:33880480-33944014	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv602841	chr6:33880480-33944014	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33903200-33906000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:33903600-33906800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:33904000-33904800	Enhancers	Fetal Thymus	thymus
4	chr6:33904400-33905200	Bivalent Enhancer	HUVEC	blood vessel
5	chr6:33904600-33905000	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr6:33904600-33905200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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