Variant report

Variant	rs1240086
Chromosome Location	chr8:90113513-90113514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10955937	0.88[EUR][1000 genomes]
rs1240027	0.86[ASN][1000 genomes]
rs1240044	0.88[ASN][1000 genomes]
rs1240056	0.82[ASN][1000 genomes]
rs1240057	0.82[ASN][1000 genomes]
rs1240063	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1240070	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1240072	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1240080	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1240081	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1240087	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1262791	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1586140	0.88[ASN][1000 genomes]
rs1681451	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1733918	0.93[ASN][1000 genomes]
rs384160	0.84[AMR][1000 genomes]
rs427521	0.84[AMR][1000 genomes]
rs6996186	0.85[ASN][1000 genomes]
rs7841364	0.90[ASN][1000 genomes]
rs980020	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023176	chr8:89707267-90154549	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1015363	chr8:89707267-90158090	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1022619	chr8:89709240-90137813	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv891177	chr8:89941889-90166429	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1024956	chr8:90104423-90459539	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv539671	chr8:90104423-90459539	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90111800-90114200	Enhancers	Hela-S3	cervix
2	chr8:90112000-90113600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:90112600-90113600	Enhancers	HMEC	breast
4	chr8:90113200-90114000	Enhancers	A549	lung
5	chr8:90113400-90113600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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