Variant report

Variant	rs980020
Chromosome Location	chr8:90111750-90111751
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10087014	0.84[EUR][1000 genomes]
rs11776005	0.86[EUR][1000 genomes]
rs11991355	0.86[EUR][1000 genomes]
rs1240027	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1240044	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1240056	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1240057	0.88[ASN][1000 genomes]
rs1240063	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1240070	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1240072	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1240080	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1240081	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1240086	0.93[ASN][1000 genomes]
rs1240087	0.96[ASN][1000 genomes]
rs1240138	0.86[EUR][1000 genomes]
rs1240139	0.86[EUR][1000 genomes]
rs1262791	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13266220	0.86[EUR][1000 genomes]
rs1483373	0.83[EUR][1000 genomes]
rs1586140	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1681451	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1733895	0.84[EUR][1000 genomes]
rs1733896	0.84[EUR][1000 genomes]
rs1733918	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1733950	0.86[EUR][1000 genomes]
rs1733951	0.86[EUR][1000 genomes]
rs1733960	0.86[EUR][1000 genomes]
rs1922311	0.86[EUR][1000 genomes]
rs2923309	0.97[EUR][1000 genomes]
rs318244	0.86[EUR][1000 genomes]
rs318307	0.86[EUR][1000 genomes]
rs318321	0.86[EUR][1000 genomes]
rs318327	0.97[EUR][1000 genomes]
rs384160	0.94[EUR][1000 genomes]
rs427521	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4507810	0.86[EUR][1000 genomes]
rs4961112	0.86[EUR][1000 genomes]
rs62532180	0.86[EUR][1000 genomes]
rs6469748	0.86[EUR][1000 genomes]
rs6981731	0.86[EUR][1000 genomes]
rs6996186	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7016298	0.86[EUR][1000 genomes]
rs7841364	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023176	chr8:89707267-90154549	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1015363	chr8:89707267-90158090	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1022619	chr8:89709240-90137813	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv891177	chr8:89941889-90166429	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1024956	chr8:90104423-90459539	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv539671	chr8:90104423-90459539	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90103800-90113200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:90110800-90113400	Enhancers	Osteobl	bone
3	chr8:90111000-90112200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:90111000-90112200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:90111600-90112000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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