Variant report

Variant	rs318244
Chromosome Location	chr8:90190850-90190851
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:90188779..90190304-chr8:90190359..90192960,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10955937	0.84[ASN][1000 genomes]
rs11776005	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1240027	0.80[EUR][1000 genomes]
rs1240063	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1240070	0.86[EUR][1000 genomes]
rs1240072	0.86[EUR][1000 genomes]
rs1240080	0.86[EUR][1000 genomes]
rs1240081	0.86[EUR][1000 genomes]
rs12542049	0.82[AMR][1000 genomes]
rs1262791	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12677576	0.86[ASN][1000 genomes]
rs1483373	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1681451	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1733918	0.83[EUR][1000 genomes]
rs2923309	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs318248	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs318249	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs318307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs318321	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs318327	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs384160	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs427521	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6986284	0.83[ASN][1000 genomes]
rs980020	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1024956	chr8:90104423-90459539	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv539671	chr8:90104423-90459539	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv2753596	chr8:90134084-90196984	Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2756488	chr8:90143731-90202984	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv1034759	chr8:90152834-90252502	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv2761446	chr8:90158102-90202984	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv526917	chr8:90166429-90201937	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90188800-90191000	Active TSS	HUES6 Cell Line	embryonic stem cell

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