Variant report

Variant	rs2923309
Chromosome Location	chr8:90163026-90163027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10087014	0.81[EUR][1000 genomes]
rs10955937	0.84[ASN][1000 genomes]
rs11776005	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11991355	0.83[EUR][1000 genomes]
rs1240027	0.91[EUR][1000 genomes]
rs1240044	0.86[EUR][1000 genomes]
rs1240056	0.83[EUR][1000 genomes]
rs1240063	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1240070	0.97[EUR][1000 genomes]
rs1240072	0.97[EUR][1000 genomes]
rs1240080	0.97[EUR][1000 genomes]
rs1240081	0.97[EUR][1000 genomes]
rs1240138	0.83[EUR][1000 genomes]
rs1240139	0.83[EUR][1000 genomes]
rs12542049	0.82[AMR][1000 genomes]
rs1262791	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12677576	0.87[ASN][1000 genomes]
rs13266220	0.83[EUR][1000 genomes]
rs1483373	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1586140	0.86[EUR][1000 genomes]
rs1681451	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1733895	0.81[EUR][1000 genomes]
rs1733896	0.81[EUR][1000 genomes]
rs1733918	0.94[EUR][1000 genomes]
rs1733950	0.83[EUR][1000 genomes]
rs1733951	0.83[EUR][1000 genomes]
rs1733960	0.83[EUR][1000 genomes]
rs1922311	0.83[EUR][1000 genomes]
rs318244	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs318248	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs318249	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs318307	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs318321	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs318327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs384160	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs427521	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4507810	0.83[EUR][1000 genomes]
rs4961112	0.83[EUR][1000 genomes]
rs62532180	0.83[EUR][1000 genomes]
rs6469748	0.83[EUR][1000 genomes]
rs6981731	0.83[EUR][1000 genomes]
rs6986284	0.85[ASN][1000 genomes]
rs6996186	0.83[EUR][1000 genomes]
rs7016298	0.83[EUR][1000 genomes]
rs7841364	0.83[EUR][1000 genomes]
rs980020	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv891177	chr8:89941889-90166429	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1024956	chr8:90104423-90459539	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv539671	chr8:90104423-90459539	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1016875	chr8:90121459-90175887	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2753596	chr8:90134084-90196984	Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2756488	chr8:90143731-90202984	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv1034759	chr8:90152834-90252502	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv2761446	chr8:90158102-90202984	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90162200-90163400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:90163000-90163600	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links