Variant report

Variant	rs12408812
Chromosome Location	chr1:211713433-211713434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211712198..211717179-chr1:211748278..211753995,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170385	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11119762	0.87[AMR][1000 genomes]
rs11119764	0.91[EUR][1000 genomes]
rs11119765	0.91[EUR][1000 genomes]
rs11119766	0.87[AMR][1000 genomes]
rs11119767	0.91[EUR][1000 genomes]
rs11119768	0.91[EUR][1000 genomes]
rs12073799	0.87[AMR][1000 genomes]
rs12075221	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12403129	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12404900	0.91[EUR][1000 genomes]
rs12405191	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12406030	0.91[EUR][1000 genomes]
rs12406039	0.91[EUR][1000 genomes]
rs12406055	0.91[EUR][1000 genomes]
rs12408556	0.91[EUR][1000 genomes]
rs12408588	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1415249	0.83[EUR][1000 genomes]
rs1415250	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17017695	0.91[EUR][1000 genomes]
rs4951529	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4951530	0.83[EUR][1000 genomes]
rs4951532	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4951766	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4951767	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4951768	0.86[ASN][1000 genomes]
rs57527195	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57744575	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58699261	0.91[EUR][1000 genomes]
rs60879499	0.87[EUR][1000 genomes]
rs61363325	0.91[EUR][1000 genomes]
rs61474854	0.91[EUR][1000 genomes]
rs6674800	0.91[EUR][1000 genomes]
rs72649975	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72649976	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72649977	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72649978	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7524697	0.90[EUR][1000 genomes]
rs7525277	0.91[EUR][1000 genomes]
rs7527604	0.91[EUR][1000 genomes]
rs7527626	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211689400-211715000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:211705200-211714600	Weak transcription	Right Atrium	heart
3	chr1:211705600-211714800	Weak transcription	Brain Anterior Caudate	brain
4	chr1:211705600-211714800	Weak transcription	Right Ventricle	heart
5	chr1:211708200-211714600	Weak transcription	Pancreas	Pancrea
6	chr1:211710200-211714600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:211711800-211714600	Weak transcription	Esophagus	oesophagus
8	chr1:211711800-211716000	Weak transcription	Spleen	Spleen
9	chr1:211712000-211714600	Weak transcription	Left Ventricle	heart
10	chr1:211712600-211714800	Weak transcription	Stomach Mucosa	stomach
11	chr1:211712600-211715400	Weak transcription	Fetal Heart	heart
12	chr1:211713000-211714600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr1:211713000-211714600	Weak transcription	Fetal Muscle Trunk	muscle

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