Variant report

Variant	rs60879499
Chromosome Location	chr1:211706368-211706369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11119762	0.92[ASN][1000 genomes]
rs11119764	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11119765	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11119767	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11119768	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12075221	0.81[EUR][1000 genomes]
rs12403129	0.95[EUR][1000 genomes]
rs12404900	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12405191	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12406030	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12406039	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12406055	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12408556	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12408588	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12408812	0.87[EUR][1000 genomes]
rs1415249	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1415250	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17017695	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4951529	0.94[EUR][1000 genomes]
rs4951530	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4951532	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4951766	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4951767	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57527195	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57744575	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58699261	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61363325	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61474854	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6674800	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72649975	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72649976	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72649977	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72649978	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7524697	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7525277	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7527604	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7527626	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211689400-211715000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:211701600-211711000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:211701800-211712400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:211702600-211711600	Weak transcription	Spleen	Spleen
5	chr1:211703400-211711600	Weak transcription	Esophagus	oesophagus
6	chr1:211703600-211707400	Weak transcription	Liver	Liver
7	chr1:211703800-211708800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:211704400-211710000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:211705200-211714600	Weak transcription	Right Atrium	heart
10	chr1:211705600-211711600	Weak transcription	Fetal Heart	heart
11	chr1:211705600-211714800	Weak transcription	Brain Anterior Caudate	brain
12	chr1:211705600-211714800	Weak transcription	Right Ventricle	heart
13	chr1:211705800-211710600	Weak transcription	K562	blood

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