The 2.0 version of rSNPBase

Variant report

Variant rs12409168
Chromosome Location chr1:165655559-165655560
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:165606200-165659600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:165629400-165656000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
3 chr1:165638000-165666800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr1:165638600-165665400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr1:165639200-165659800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
6 chr1:165644800-165658800 Strong transcription HSMM muscle
7 chr1:165645000-165660200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
8 chr1:165645800-165657400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr1:165647800-165658400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr1:165650000-165666800 Weak transcription Colonic Mucosa Colon
11 chr1:165651600-165659600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
12 chr1:165651600-165665400 Weak transcription Placenta Amnion Placenta Amnion
13 chr1:165651600-165667200 Weak transcription Gastric stomach
14 chr1:165651800-165665200 Weak transcription Brain Substantia Nigra brain
15 chr1:165651800-165665200 Weak transcription Skeletal Muscle Male skeletal muscle
16 chr1:165651800-165665400 Weak transcription Small Intestine intestine
17 chr1:165652000-165655600 Weak transcription Primary T killer memory cells from peripheral blood blood
18 chr1:165652000-165664000 Weak transcription Fetal Brain Male brain
19 chr1:165652200-165656000 Weak transcription Cortex derived primary cultured neurospheres brain
20 chr1:165652200-165657000 Weak transcription ES-I3 Cell Line embryonic stem cell
21 chr1:165652200-165657400 Weak transcription Primary neutrophils fromperipheralblood blood
22 chr1:165652200-165665400 Weak transcription Colon Smooth Muscle Colon
23 chr1:165652200-165665800 Weak transcription Brain Cingulate Gyrus brain
24 chr1:165652200-165666000 Weak transcription Fetal Kidney kidney
25 chr1:165652200-165666800 Weak transcription Lung lung
26 chr1:165652400-165655600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
27 chr1:165652400-165655600 Weak transcription Fetal Adrenal Gland Adrenal Gland
28 chr1:165652400-165655800 Weak transcription A549 lung
29 chr1:165652400-165656400 Weak transcription Fetal Brain Female brain
30 chr1:165652400-165657200 Weak transcription Duodenum Mucosa Duodenum
31 chr1:165652400-165657200 Weak transcription HepG2 liver
32 chr1:165652400-165657400 Weak transcription HUVEC blood vessel
33 chr1:165652400-165658800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
34 chr1:165652400-165659200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
35 chr1:165652400-165659400 Weak transcription HUES48 Cell Line embryonic stem cell
36 chr1:165652400-165659600 Weak transcription H1 Cell Line embryonic stem cell
37 chr1:165652400-165659600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr1:165652400-165659600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
39 chr1:165652400-165659600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
40 chr1:165652400-165659800 Weak transcription Brain Angular Gyrus brain
41 chr1:165652400-165665200 Weak transcription Rectal Mucosa Donor 29 rectum
42 chr1:165652400-165665400 Weak transcription HMEC breast
43 chr1:165652400-165665400 Weak transcription NH-A brain
44 chr1:165652400-165665800 Weak transcription Rectal Smooth Muscle rectum
45 chr1:165652400-165665800 Weak transcription Stomach Smooth Muscle stomach
46 chr1:165652400-165665800 Weak transcription HSMMtube muscle
47 chr1:165652400-165666800 Weak transcription H9 Cell Line embryonic stem cell
48 chr1:165652400-165666800 Weak transcription Esophagus oesophagus
49 chr1:165652400-165667000 Weak transcription Pancreas Pancrea
50 chr1:165652400-165667000 Weak transcription Spleen Spleen

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Last update: Aug 31, 2015