Variant report

Variant	rs12412315
Chromosome Location	chr10:55368711-55368712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10762999	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10825074	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10825078	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10825079	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10825081	0.86[EUR][1000 genomes]
rs10825082	0.87[EUR][1000 genomes]
rs10825083	0.87[EUR][1000 genomes]
rs10825084	0.87[EUR][1000 genomes]
rs10825085	0.87[EUR][1000 genomes]
rs10825086	0.87[EUR][1000 genomes]
rs10825087	0.87[EUR][1000 genomes]
rs10825088	0.87[EUR][1000 genomes]
rs10825089	0.87[EUR][1000 genomes]
rs11003708	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11003709	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11003724	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11003726	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11003727	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11003731	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11003740	0.88[EUR][1000 genomes]
rs11003743	0.87[EUR][1000 genomes]
rs11003746	0.88[EUR][1000 genomes]
rs11003747	0.87[EUR][1000 genomes]
rs11003748	0.87[EUR][1000 genomes]
rs11003749	0.87[EUR][1000 genomes]
rs11003750	0.87[EUR][1000 genomes]
rs11003751	0.87[EUR][1000 genomes]
rs11003752	0.87[EUR][1000 genomes]
rs11003753	0.86[EUR][1000 genomes]
rs11003754	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11003755	0.86[EUR][1000 genomes]
rs11003756	0.87[EUR][1000 genomes]
rs11003762	0.87[EUR][1000 genomes]
rs11814564	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12412620	0.87[EUR][1000 genomes]
rs12416362	0.87[EUR][1000 genomes]
rs12776465	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12778875	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12781314	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1343016	0.89[EUR][1000 genomes]
rs1489824	0.87[EUR][1000 genomes]
rs1489828	0.90[EUR][1000 genomes]
rs1489836	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1602162	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1686679	0.87[EUR][1000 genomes]
rs16937617	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1825794	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2153948	0.87[EUR][1000 genomes]
rs2153949	0.88[EUR][1000 genomes]
rs2153950	0.88[EUR][1000 genomes]
rs2185842	0.87[EUR][1000 genomes]
rs2384268	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2384269	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2384300	0.88[EUR][1000 genomes]
rs2384301	0.87[EUR][1000 genomes]
rs4607982	0.87[EUR][1000 genomes]
rs4935081	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4935082	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4935454	0.88[ASN][1000 genomes]
rs57372970	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59556125	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61859909	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7067829	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7077970	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7096810	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs721276	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7906396	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs825805	0.87[EUR][1000 genomes]
rs9416278	0.82[EUR][1000 genomes]
rs9416279	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9416280	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9416283	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9416284	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9416287	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9416289	0.87[ASN][1000 genomes]
rs9988661	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1044282	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv540631	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1043501	chr10:55186701-55516253	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv540632	chr10:55186701-55516253	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1050323	chr10:55190079-55546575	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2757386	chr10:55357136-55531037	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2759753	chr10:55357136-55586930	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv2758220	chr10:55360612-55586930	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1047468	chr10:55361202-55459392	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv550930	chr10:55365419-55395380	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55362200-55371400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:55366000-55371200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:55367800-55376600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr10:55368000-55373200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr10:55368000-55379000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:55368200-55373200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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