Variant report

Variant	rs12413002
Chromosome Location	chr10:95654427-95654428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:95647063..95650467-chr10:95654358..95657175,3	MCF-7	breast:
2	chr10:95459724..95462239-chr10:95654343..95656368,2	K562	blood:
3	chr10:95652670..95655434-chr10:96073530..96076292,2	MCF-7	breast:
4	chr10:95576767..95579702-chr10:95653982..95656369,2	K562	blood:

Variant related genes	Relation type
ENSG00000273450	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10786145	0.90[ASN][1000 genomes]
rs10882355	0.90[ASN][1000 genomes]
rs10882356	0.90[ASN][1000 genomes]
rs10882362	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187680	0.85[ASN][1000 genomes]
rs11187721	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11187722	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11187723	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11187728	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12356200	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2113955	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34424393	1.00[ASN][1000 genomes]
rs35629779	0.95[ASN][1000 genomes]
rs4919616	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7068140	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7096071	0.95[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95652800-95654600	Active TSS	Brain Angular Gyrus	brain
2	chr10:95653000-95654600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:95653000-95654600	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr10:95653000-95654600	Active TSS	Skeletal Muscle Female	skeletal muscle
5	chr10:95653000-95654600	Active TSS	A549	lung
6	chr10:95653000-95654600	Active TSS	HepG2	liver
7	chr10:95653000-95654600	Active TSS	K562	blood
8	chr10:95653000-95654800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:95653000-95655200	Active TSS	Rectal Smooth Muscle	rectum
10	chr10:95653200-95654600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:95653200-95654600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
12	chr10:95653200-95654600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:95653200-95654600	Active TSS	Brain Anterior Caudate	brain
14	chr10:95653200-95654600	Active TSS	Colonic Mucosa	Colon
15	chr10:95653200-95654600	Active TSS	Fetal Intestine Large	intestine
16	chr10:95653200-95654600	Active TSS	Ovary	ovary
17	chr10:95653200-95654600	Active TSS	Pancreas	Pancrea
18	chr10:95653200-95654600	Active TSS	Right Atrium	heart
19	chr10:95653200-95654600	Active TSS	NHDF-Ad	bronchial
20	chr10:95653200-95654800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr10:95653200-95654800	Active TSS	Fetal Kidney	kidney
22	chr10:95653200-95654800	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr10:95653200-95654800	Active TSS	HSMM	muscle
24	chr10:95653200-95655000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
25	chr10:95653200-95655000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr10:95653200-95655000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
27	chr10:95653200-95655000	Active TSS	NHLF	lung
28	chr10:95653200-95655200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
29	chr10:95653200-95655600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
30	chr10:95653200-95655600	Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr10:95653200-95655800	Active TSS	Fetal Intestine Small	intestine
32	chr10:95653400-95654600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr10:95653400-95654600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
34	chr10:95653400-95654600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr10:95653400-95654600	Active TSS	Esophagus	oesophagus
36	chr10:95653400-95654600	Active TSS	Lung	lung
37	chr10:95653400-95654600	Active TSS	Small Intestine	intestine
38	chr10:95653400-95654800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr10:95653400-95654800	Flanking Active TSS	Primary hematopoietic stem cells	blood
40	chr10:95653400-95655000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr10:95653400-95655000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
42	chr10:95653600-95654600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:95653600-95654600	Active TSS	Breast Myoepithelial Primary Cells	Breast
44	chr10:95653600-95654600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr10:95653600-95654600	Active TSS	Fetal Lung	lung
46	chr10:95653600-95654600	Active TSS	Rectal Mucosa Donor 31	rectum
47	chr10:95653600-95654600	Active TSS	Sigmoid Colon	Sigmoid Colon
48	chr10:95653800-95654600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
49	chr10:95653800-95654600	Active TSS	HMEC	breast
50	chr10:95653800-95654800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--

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