Variant report

Variant	rs7068140
Chromosome Location	chr10:95610978-95610979
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10786145	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882355	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882356	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882362	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11187680	0.90[ASN][1000 genomes]
rs11187721	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187722	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187723	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187728	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12356200	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12413002	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2113955	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.95[ASN][1000 genomes]
rs34424393	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35629779	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919616	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7096071	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7068140	MMS19	cis	cerebellum	SCAN
rs7068140	PLCE1	cis	cerebellum	SCAN
rs7068140	RPL13AP5	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95608200-95611400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:95608600-95611000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
3	chr10:95609000-95611000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:95609400-95611000	Enhancers	Fetal Brain Female	brain
5	chr10:95609400-95611000	Enhancers	Fetal Stomach	stomach
6	chr10:95609400-95611200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:95609600-95614400	Weak transcription	Small Intestine	intestine
8	chr10:95610000-95611200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr10:95610200-95612000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:95610400-95611200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
11	chr10:95610400-95611200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:95610800-95611000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
13	chr10:95610800-95611000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
14	chr10:95610800-95611200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:95610800-95611400	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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