Variant report

Variant	rs12414211
Chromosome Location	chr10:90568010-90568011
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1029024	0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs1029025	0.90[ASN][1000 genomes]
rs10509555	1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10509556	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs10509558	1.00[TSI][hapmap]
rs10509560	1.00[TSI][hapmap]
rs12242274	1.00[TSI][hapmap]
rs12254451	1.00[TSI][hapmap]
rs12257540	1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[ASN][1000 genomes]
rs12263461	1.00[TSI][hapmap]
rs12412357	0.85[AMR][1000 genomes]
rs12412604	0.81[AMR][1000 genomes]
rs12412903	0.81[AMR][1000 genomes]
rs12413277	1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12414648	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12414800	0.91[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1339780	0.85[AMR][1000 genomes]
rs1339781	0.85[AMR][1000 genomes]
rs17112748	0.85[AMR][1000 genomes]
rs17112781	0.85[AMR][1000 genomes]
rs17112872	0.85[AMR][1000 genomes]
rs17112956	0.85[AMR][1000 genomes]
rs17112974	0.85[AMR][1000 genomes]
rs17113067	0.85[AMR][1000 genomes]
rs17113082	0.85[AMR][1000 genomes]
rs17113129	0.85[AMR][1000 genomes]
rs17113165	0.85[AMR][1000 genomes]
rs17113311	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17113344	1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17113363	0.91[CHB][hapmap];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17113426	0.83[CHB][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17113457	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs17113476	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs17114116	1.00[TSI][hapmap]
rs17114283	1.00[TSI][hapmap]
rs2231786	1.00[TSI][hapmap]
rs2282122	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3781206	1.00[TSI][hapmap]
rs3814691	0.91[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3816245	1.00[TSI][hapmap]
rs4933485	0.85[AMR][1000 genomes]
rs4934421	0.85[AMR][1000 genomes]
rs4934422	0.85[AMR][1000 genomes]
rs56848106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56998609	0.96[ASN][1000 genomes]
rs57259051	0.92[AMR][1000 genomes]
rs57934910	0.85[AMR][1000 genomes]
rs58036732	0.85[AMR][1000 genomes]
rs58986570	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59254861	0.85[AMR][1000 genomes]
rs59661152	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs60040082	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60523093	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7077019	1.00[TSI][hapmap]
rs7908852	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv831941	chr10:90410488-90587332	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
5	nsv1043015	chr10:90467067-90593692	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv467415	chr10:90478483-90600865	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
7	nsv551840	chr10:90478483-90600865	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
8	nsv831942	chr10:90564697-90730352	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90560800-90569600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:90564200-90569200	Weak transcription	Fetal Thymus	thymus
3	chr10:90564600-90569600	Weak transcription	NHEK	skin
4	chr10:90564600-90569800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:90564800-90569600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:90565800-90569800	Weak transcription	A549	lung
7	chr10:90566000-90569600	Weak transcription	Hela-S3	cervix
8	chr10:90566200-90569600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links