Variant report

Variant	rs17112872
Chromosome Location	chr10:90541095-90541096
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10509558	1.00[TSI][hapmap]
rs10509560	1.00[TSI][hapmap]
rs12242274	1.00[TSI][hapmap]
rs12254451	1.00[TSI][hapmap]
rs12257540	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs12263461	1.00[TSI][hapmap]
rs12412357	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12412604	0.81[AMR][1000 genomes]
rs12412903	0.81[AMR][1000 genomes]
rs12413277	1.00[GIH][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes]
rs12414211	0.85[AMR][1000 genomes]
rs12414648	0.85[AMR][1000 genomes]
rs1339780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17112974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17113067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17113082	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17113129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17113165	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17113311	0.85[AMR][1000 genomes]
rs17113344	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17113426	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs17114116	1.00[TSI][hapmap]
rs17114283	1.00[TSI][hapmap]
rs2231786	1.00[TSI][hapmap]
rs2282122	0.85[AMR][1000 genomes]
rs303480	0.80[ASN][1000 genomes]
rs303490	0.80[ASN][1000 genomes]
rs303491	0.80[ASN][1000 genomes]
rs303492	0.86[CHB][hapmap]
rs303493	0.86[CHB][hapmap]
rs377183	0.80[ASN][1000 genomes]
rs3781206	1.00[TSI][hapmap]
rs3814691	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs3816245	1.00[TSI][hapmap]
rs402781	0.80[ASN][1000 genomes]
rs425028	0.80[ASN][1000 genomes]
rs450011	0.80[ASN][1000 genomes]
rs4933485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4934421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4934422	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs56848106	0.85[AMR][1000 genomes]
rs57259051	0.92[AMR][1000 genomes]
rs57934910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58036732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58641899	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58986570	0.85[AMR][1000 genomes]
rs59254861	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs59661152	0.85[AMR][1000 genomes]
rs60040082	0.85[AMR][1000 genomes]
rs60523093	0.85[AMR][1000 genomes]
rs7077019	1.00[TSI][hapmap]
rs7908852	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv831941	chr10:90410488-90587332	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
5	nsv1043015	chr10:90467067-90593692	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv467415	chr10:90478483-90600865	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
7	nsv551840	chr10:90478483-90600865	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90531800-90543600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr10:90538200-90543600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr10:90540600-90541200	Enhancers	Hela-S3	cervix
4	chr10:90540600-90541400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:90540800-90541400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:90540800-90541400	Enhancers	NHEK	skin
7	chr10:90540800-90541600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:90540800-90541800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:90541000-90541400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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