Variant report

Variant	rs17113067
Chromosome Location	chr10:90554417-90554418
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90464724..90467365-chr10:90553765..90555681,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10509558	1.00[TSI][hapmap]
rs10509560	1.00[TSI][hapmap]
rs12242274	1.00[TSI][hapmap]
rs12254451	1.00[TSI][hapmap]
rs12257540	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs12263461	1.00[TSI][hapmap]
rs12412357	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12412604	0.81[AMR][1000 genomes]
rs12412903	0.81[AMR][1000 genomes]
rs12413277	1.00[GIH][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes]
rs12414211	0.85[AMR][1000 genomes]
rs12414648	0.85[AMR][1000 genomes]
rs1339780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1339781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17112748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17112781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17112872	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17112956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17112974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17113082	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17113129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17113165	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17113311	0.85[AMR][1000 genomes]
rs17113344	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17113426	0.82[GIH][hapmap];1.00[TSI][hapmap]
rs17114116	1.00[TSI][hapmap]
rs17114283	1.00[TSI][hapmap]
rs2231786	1.00[TSI][hapmap]
rs2282122	0.85[AMR][1000 genomes]
rs303480	0.87[ASN][1000 genomes]
rs303490	0.87[ASN][1000 genomes]
rs303491	0.87[ASN][1000 genomes]
rs303492	0.86[CHB][hapmap];0.89[ASN][1000 genomes]
rs303493	0.86[CHB][hapmap];0.89[ASN][1000 genomes]
rs377183	0.87[ASN][1000 genomes]
rs3781206	1.00[TSI][hapmap]
rs3814691	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs3816245	1.00[TSI][hapmap]
rs402781	0.87[ASN][1000 genomes]
rs425028	0.87[ASN][1000 genomes]
rs450011	0.87[ASN][1000 genomes]
rs4933485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4934421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4934422	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56848106	0.85[AMR][1000 genomes]
rs57259051	0.92[AMR][1000 genomes]
rs57934910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58036732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58641899	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58986570	0.85[AMR][1000 genomes]
rs59254861	1.00[AMR][1000 genomes]
rs59661152	0.85[AMR][1000 genomes]
rs60040082	0.85[AMR][1000 genomes]
rs60523093	0.85[AMR][1000 genomes]
rs7077019	1.00[TSI][hapmap]
rs7908852	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv831941	chr10:90410488-90587332	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
5	nsv1043015	chr10:90467067-90593692	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv467415	chr10:90478483-90600865	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
7	nsv551840	chr10:90478483-90600865	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90551000-90555000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr10:90551400-90554600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:90551800-90554800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr10:90551800-90555000	Enhancers	Osteobl	bone
5	chr10:90552000-90555600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:90552200-90554800	Enhancers	NHDF-Ad	bronchial
7	chr10:90552200-90555000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:90552400-90554800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:90552800-90554800	Enhancers	Hela-S3	cervix
10	chr10:90553200-90560400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:90554000-90554800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
12	chr10:90554200-90554800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links