Variant report

Variant	rs12414402
Chromosome Location	chr10:25232247-25232248
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25230623..25233059-chr10:25234068..25237014,2	K562	blood:
2	chr10:25228270..25233826-chr10:25234068..25237911,6	K562	blood:
3	chr10:25227547..25229329-chr10:25231283..25232998,2	MCF-7	breast:
4	chr10:25229734..25232963-chr10:25239318..25242325,3	K562	blood:
5	chr10:25218744..25220681-chr10:25231634..25233953,2	K562	blood:

Variant related genes	Relation type
ENSG00000273107	Chromatin interaction
ENSG00000099256	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12415062	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12415709	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs16925176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs60980778	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25191600-25240600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:25210400-25236600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:25210600-25233400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:25210600-25233400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:25211400-25239800	Weak transcription	Fetal Kidney	kidney
6	chr10:25215800-25240000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:25218600-25233400	Weak transcription	NHLF	lung
8	chr10:25218800-25236600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:25219000-25236600	Weak transcription	Ovary	ovary
10	chr10:25219200-25233600	Weak transcription	NHDF-Ad	bronchial
11	chr10:25219200-25240000	Weak transcription	Dnd41	blood
12	chr10:25219800-25233200	Weak transcription	A549	lung
13	chr10:25221400-25233800	Weak transcription	Colon Smooth Muscle	Colon
14	chr10:25223600-25233400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:25224200-25236400	Weak transcription	Brain Germinal Matrix	brain
16	chr10:25224400-25233400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:25224600-25236000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr10:25225400-25233000	Weak transcription	Fetal Intestine Large	intestine
19	chr10:25225400-25240000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr10:25225400-25240000	Weak transcription	Fetal Brain Female	brain
21	chr10:25225800-25232800	Weak transcription	Fetal Intestine Small	intestine
22	chr10:25225800-25233600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:25226000-25233200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr10:25226200-25239800	Weak transcription	Fetal Lung	lung
25	chr10:25226400-25239200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:25227600-25233600	Weak transcription	Brain Anterior Caudate	brain
27	chr10:25227600-25236600	Weak transcription	Pancreas	Pancrea
28	chr10:25227800-25233800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr10:25227800-25233800	Weak transcription	Brain Substantia Nigra	brain
30	chr10:25227800-25235400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr10:25227800-25235800	Weak transcription	Brain Angular Gyrus	brain
32	chr10:25228000-25232800	Weak transcription	K562	blood
33	chr10:25228000-25233800	Weak transcription	Brain Hippocampus Middle	brain
34	chr10:25228000-25235600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr10:25228200-25239800	Weak transcription	Fetal Stomach	stomach
36	chr10:25229800-25236600	Weak transcription	Fetal Muscle Leg	muscle
37	chr10:25230000-25233600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr10:25232200-25232400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
39	chr10:25232200-25232800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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