Variant report

Variant	rs60980778
Chromosome Location	chr10:25385690-25385691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12414402	1.00[AFR][1000 genomes]
rs12415062	1.00[AFR][1000 genomes]
rs12415709	1.00[AFR][1000 genomes]
rs16925176	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550224	chr10:25335854-25385858	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv894969	chr10:25345720-25395579	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25385000-25386800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:25385200-25386600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:25385400-25385800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:25385400-25386000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr10:25385400-25386000	Enhancers	Brain Substantia Nigra	brain
6	chr10:25385400-25386400	Enhancers	Brain Cingulate Gyrus	brain
7	chr10:25385600-25386000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:25385600-25386000	Enhancers	Brain Anterior Caudate	brain
9	chr10:25385600-25386000	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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