Variant report

Variant	rs16925176
Chromosome Location	chr10:25234807-25234808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25230623..25233059-chr10:25234068..25237014,2	K562	blood:
2	chr10:25228270..25233826-chr10:25234068..25237911,6	K562	blood:
3	chr10:25217701..25221558-chr10:25232453..25235331,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12414402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12415062	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12415709	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs60980778	1.00[AFR][1000 genomes]
rs7083691	0.86[ASN][1000 genomes]
rs73606600	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25191600-25240600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:25210400-25236600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:25211400-25239800	Weak transcription	Fetal Kidney	kidney
4	chr10:25215800-25240000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:25218800-25236600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:25219000-25236600	Weak transcription	Ovary	ovary
7	chr10:25219200-25240000	Weak transcription	Dnd41	blood
8	chr10:25224200-25236400	Weak transcription	Brain Germinal Matrix	brain
9	chr10:25224600-25236000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:25225400-25240000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:25225400-25240000	Weak transcription	Fetal Brain Female	brain
12	chr10:25226200-25239800	Weak transcription	Fetal Lung	lung
13	chr10:25226400-25239200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:25227600-25236600	Weak transcription	Pancreas	Pancrea
15	chr10:25227800-25235400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr10:25227800-25235800	Weak transcription	Brain Angular Gyrus	brain
17	chr10:25228000-25235600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:25228200-25239800	Weak transcription	Fetal Stomach	stomach
19	chr10:25229800-25236600	Weak transcription	Fetal Muscle Leg	muscle
20	chr10:25232600-25239800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:25232800-25240000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr10:25233200-25235000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr10:25233200-25235000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr10:25233600-25236200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:25233600-25237800	Enhancers	Brain Anterior Caudate	brain
26	chr10:25233800-25236600	Enhancers	Brain Hippocampus Middle	brain
27	chr10:25234000-25235800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:25234000-25236200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:25234000-25236200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr10:25234200-25235400	Weak transcription	Brain Substantia Nigra	brain
31	chr10:25234200-25235800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr10:25234200-25235800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:25234200-25235800	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr10:25234200-25235800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:25234200-25236400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:25234200-25236400	Weak transcription	Small Intestine	intestine
37	chr10:25234200-25237200	Weak transcription	Hela-S3	cervix
38	chr10:25234200-25240400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr10:25234200-25240400	Weak transcription	Colon Smooth Muscle	Colon
40	chr10:25234200-25240600	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr10:25234200-25240600	Weak transcription	Right Atrium	heart
42	chr10:25234400-25235800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr10:25234400-25235800	Weak transcription	HMEC	breast
44	chr10:25234400-25236000	Weak transcription	NHDF-Ad	bronchial
45	chr10:25234400-25236000	Weak transcription	NHEK	skin
46	chr10:25234400-25236000	Weak transcription	Osteobl	bone
47	chr10:25234400-25236200	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr10:25234400-25236200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr10:25234400-25236200	Weak transcription	NH-A	brain
50	chr10:25234400-25236200	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links