Variant report
| Variant | rs12415616 |
|---|---|
| Chromosome Location | chr10:83184701-83184702 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:83184138..83185730-chr10:83186602..83188404,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10786402 | 0.83[ASN][1000 genomes] |
| rs10883052 | 0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11189512 | 0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11189514 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12414363 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2346229 | 0.82[ASN][1000 genomes] |
| rs2493563 | 0.83[ASN][1000 genomes] |
| rs473372 | 0.83[ASN][1000 genomes] |
| rs500829 | 0.82[ASN][1000 genomes] |
| rs528028 | 0.83[ASN][1000 genomes] |
| rs528993 | 0.83[ASN][1000 genomes] |
| rs529856 | 0.83[ASN][1000 genomes] |
| rs552977 | 0.83[ASN][1000 genomes] |
| rs553804 | 0.83[ASN][1000 genomes] |
| rs555750 | 0.84[ASN][1000 genomes] |
| rs557354 | 0.84[ASN][1000 genomes] |
| rs561182 | 0.84[ASN][1000 genomes] |
| rs586063 | 0.83[ASN][1000 genomes] |
| rs587438 | 0.83[ASN][1000 genomes] |
| rs649207 | 0.84[ASN][1000 genomes] |
| rs681379 | 0.84[ASN][1000 genomes] |
| rs681434 | 0.84[ASN][1000 genomes] |
| rs7069875 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7088454 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs751565 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs913633 | 0.83[ASN][1000 genomes] |
| rs913634 | 0.83[ASN][1000 genomes] |
| rs9420663 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3449683 | chr10:82972143-83304804 | ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | esv3421917 | chr10:82972163-83304774 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv870428 | chr10:83035110-83306265 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv467398 | chr10:83134434-83840542 | Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv551669 | chr10:83134434-83840542 | Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | esv2760113 | chr10:83182777-83190956 | Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:83184400-83184800 | Enhancers | HUES48 Cell Line | embryonic stem cell |
| 2 | chr10:83184400-83184800 | Enhancers | Brain Germinal Matrix | brain |
