The 2.0 version of rSNPBase

Variant report

Variant rs12415680
Chromosome Location chr10:90780737-90780738
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:89 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:90754000-90789600 Weak transcription A549 lung
2 chr10:90756200-90781800 Weak transcription Stomach Mucosa stomach
3 chr10:90761800-90783800 Weak transcription Gastric stomach
4 chr10:90761800-90786200 Strong transcription Monocytes-CD14+_RO01746 blood
5 chr10:90762400-90785800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
6 chr10:90762600-90786000 Strong transcription Breast Myoepithelial Primary Cells Breast
7 chr10:90762800-90781000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
8 chr10:90762800-90782000 Weak transcription Primary T killer naive cells fromperipheralblood blood
9 chr10:90763600-90780800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr10:90766200-90785600 Strong transcription GM12878-XiMat blood
11 chr10:90767400-90781000 Strong transcription Osteobl bone
12 chr10:90767600-90780800 Strong transcription Primary T helper 17 cells PMA-I stimulated --
13 chr10:90767600-90786600 Strong transcription Primary T regulatory cells fromperipheralblood blood
14 chr10:90767800-90781800 Weak transcription Small Intestine intestine
15 chr10:90768400-90785000 Weak transcription Skeletal Muscle Male skeletal muscle
16 chr10:90769400-90781400 Strong transcription Rectal Mucosa Donor 31 rectum
17 chr10:90771600-90782600 Weak transcription H1 Cell Line embryonic stem cell
18 chr10:90771600-90784800 Weak transcription Skeletal Muscle Female skeletal muscle
19 chr10:90771600-90789600 Weak transcription Brain Anterior Caudate brain
20 chr10:90771800-90808600 Weak transcription Primary T cells from cord blood blood
21 chr10:90772400-90795000 Weak transcription Placenta Placenta
22 chr10:90772600-90784600 Weak transcription Fetal Muscle Trunk muscle
23 chr10:90772600-90789600 Weak transcription Fetal Stomach stomach
24 chr10:90772600-90791800 Weak transcription Esophagus oesophagus
25 chr10:90772600-90792000 Weak transcription Colonic Mucosa Colon
26 chr10:90772600-90795800 Weak transcription Rectal Smooth Muscle rectum
27 chr10:90773800-90780800 Strong transcription Primary T cells fromperipheralblood blood
28 chr10:90774400-90780800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr10:90774400-90781200 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
30 chr10:90774600-90784800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr10:90774800-90781600 Strong transcription Ovary ovary
32 chr10:90775000-90789400 Weak transcription Fetal Adrenal Gland Adrenal Gland
33 chr10:90775200-90789400 Weak transcription NH-A brain
34 chr10:90776000-90781000 Strong transcription Aorta Aorta
35 chr10:90776000-90781000 Strong transcription Sigmoid Colon Sigmoid Colon
36 chr10:90776200-90781000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
37 chr10:90776200-90789400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
38 chr10:90776600-90781400 Weak transcription Pancreas Pancrea
39 chr10:90776600-90792600 Weak transcription Right Ventricle heart
40 chr10:90776800-90789400 Weak transcription Stomach Smooth Muscle stomach
41 chr10:90777800-90781400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
42 chr10:90778000-90791200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
43 chr10:90778800-90780800 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
44 chr10:90778800-90781000 Strong transcription Duodenum Smooth Muscle Duodenum
45 chr10:90778800-90781200 Strong transcription NHDF-Ad bronchial
46 chr10:90779000-90780800 ZNF genes & repeats Dnd41 blood
47 chr10:90779000-90781000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr10:90779200-90780800 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
49 chr10:90779200-90791600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
50 chr10:90779400-90780800 Strong transcription Primary T helper cells fromperipheralblood blood

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Last update: Aug 31, 2015