Variant report

Variant	rs72809352
Chromosome Location	chr10:90742624-90742625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90740958..90743337-chr10:90743863..90746089,2	MCF-7	breast:
2	chr10:90741270..90743271-chr10:90750975..90752667,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKRD22-2	chr10:90741162-90742712	refGeneNc_781_NR_028371

Variant related genes	Relation type
ENSG00000107796	Chromatin interaction
ENSG00000026103	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12411483	1.00[ASN][1000 genomes]
rs12412701	1.00[ASN][1000 genomes]
rs12415680	1.00[ASN][1000 genomes]
rs12416581	1.00[ASN][1000 genomes]
rs2234768	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2862834	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34462240	1.00[ASN][1000 genomes]
rs34891735	1.00[ASN][1000 genomes]
rs36206197	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740281	1.00[ASN][1000 genomes]
rs3758483	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4345878	0.81[EUR][1000 genomes]
rs55803311	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079111	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72809360	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72810908	1.00[ASN][1000 genomes]
rs7909414	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9325604	1.00[ASN][1000 genomes]
rs9658691	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658727	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658757	1.00[ASN][1000 genomes]
rs9658766	1.00[ASN][1000 genomes]
rs9658786	1.00[ASN][1000 genomes]
rs9658788	1.00[ASN][1000 genomes]
rs9658791	1.00[ASN][1000 genomes]
rs983751	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90735200-90749800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr10:90735600-90746400	Weak transcription	HepG2	liver
3	chr10:90735600-90748600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:90735600-90749200	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:90735600-90749200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:90735800-90743800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr10:90735800-90746400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:90736400-90743200	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr10:90738200-90744200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:90738200-90744800	Enhancers	Rectal Smooth Muscle	rectum
11	chr10:90738200-90747800	Enhancers	Colon Smooth Muscle	Colon
12	chr10:90739200-90743000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:90739200-90745200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:90739400-90743800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:90739400-90745000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr10:90739400-90749400	Weak transcription	NHEK	skin
17	chr10:90739600-90742800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:90739600-90746400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:90739600-90747200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:90739600-90748600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:90739600-90749000	Weak transcription	Adipose Nuclei	Adipose
22	chr10:90739600-90749200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:90739800-90742800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr10:90739800-90749200	Weak transcription	HMEC	breast
25	chr10:90740200-90749200	Weak transcription	Left Ventricle	heart
26	chr10:90740400-90746400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr10:90740600-90743000	Enhancers	Stomach Mucosa	stomach
28	chr10:90740600-90745200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr10:90740800-90743000	Weak transcription	Fetal Stomach	stomach
30	chr10:90740800-90749200	Weak transcription	NH-A	brain
31	chr10:90741000-90742800	Enhancers	NHLF	lung
32	chr10:90741000-90743400	Weak transcription	Osteobl	bone
33	chr10:90741000-90745200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:90741000-90747200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:90741000-90747400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:90741000-90749200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr10:90741000-90749400	Weak transcription	Spleen	Spleen
38	chr10:90741400-90743600	Weak transcription	Fetal Intestine Large	intestine
39	chr10:90741400-90744800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:90741600-90743600	Weak transcription	Ovary	ovary
41	chr10:90741600-90745600	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr10:90741600-90749200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr10:90741600-90749200	Weak transcription	Psoas Muscle	Psoas
44	chr10:90741600-90749400	Weak transcription	HSMM	muscle
45	chr10:90741800-90743000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr10:90742000-90742800	Enhancers	Brain Hippocampus Middle	brain
47	chr10:90742000-90743000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr10:90742000-90743600	Weak transcription	Right Atrium	heart
49	chr10:90742200-90743200	Enhancers	NHDF-Ad	bronchial
50	chr10:90742400-90742800	Enhancers	Brain Cingulate Gyrus	brain

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