Variant report

Variant	rs9658727
Chromosome Location	chr10:90761865-90761866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90760115..90762878-chr10:90763662..90767506,4	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12411452	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12411483	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12412106	1.00[CHB][hapmap]
rs12412701	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12415680	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416581	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2234768	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2862834	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs34462240	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34891735	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36206197	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740281	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758483	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs55803311	1.00[ASN][1000 genomes]
rs66782588	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7079111	1.00[ASN][1000 genomes]
rs72809352	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72809360	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72810908	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7909414	1.00[ASN][1000 genomes]
rs9325604	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658691	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658750	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9658757	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658766	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658786	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658788	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658791	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs983751	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv551841	chr10:90759724-90775756	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90751800-90768200	Weak transcription	Spleen	Spleen
2	chr10:90752000-90770000	Weak transcription	Placenta	Placenta
3	chr10:90752000-90770800	Weak transcription	Esophagus	oesophagus
4	chr10:90752200-90768400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:90752800-90773400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:90754000-90779400	Weak transcription	HepG2	liver
7	chr10:90754000-90789600	Weak transcription	A549	lung
8	chr10:90754200-90763200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:90754200-90767000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr10:90755600-90762600	Weak transcription	Liver	Liver
11	chr10:90755600-90768200	Weak transcription	Lung	lung
12	chr10:90755600-90771400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:90755600-90776000	Weak transcription	Left Ventricle	heart
14	chr10:90755600-90776200	Weak transcription	Pancreas	Pancrea
15	chr10:90755800-90762400	Weak transcription	Hela-S3	cervix
16	chr10:90756200-90781800	Weak transcription	Stomach Mucosa	stomach
17	chr10:90756800-90769200	Weak transcription	Colonic Mucosa	Colon
18	chr10:90757000-90770800	Weak transcription	Primary B cells from cord blood	blood
19	chr10:90757400-90762600	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr10:90759000-90762200	Flanking Active TSS	GM12878-XiMat	blood
21	chr10:90759400-90763600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:90759400-90763800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:90760200-90762000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
24	chr10:90760200-90762000	Enhancers	Fetal Lung	lung
25	chr10:90760200-90762200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
26	chr10:90760400-90762000	Enhancers	Fetal Muscle Leg	muscle
27	chr10:90760400-90762200	Enhancers	Brain Anterior Caudate	brain
28	chr10:90760400-90762200	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr10:90760400-90762400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr10:90760400-90762400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
31	chr10:90760400-90762800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr10:90760400-90762800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
33	chr10:90760400-90764800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr10:90760400-90780400	Weak transcription	Brain Angular Gyrus	brain
35	chr10:90760600-90762000	Enhancers	NHEK	skin
36	chr10:90760600-90762400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:90760600-90762600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr10:90760600-90762800	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr10:90760600-90763800	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr10:90760800-90762000	Enhancers	Brain Hippocampus Middle	brain
41	chr10:90760800-90762000	Enhancers	Brain Substantia Nigra	brain
42	chr10:90760800-90762600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr10:90760800-90762600	Enhancers	Fetal Thymus	thymus
44	chr10:90760800-90763000	Enhancers	Primary T cells from cord blood	blood
45	chr10:90761000-90762000	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr10:90761000-90762000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr10:90761000-90762000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
48	chr10:90761000-90762000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:90761000-90762200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr10:90761000-90762200	Enhancers	Colon Smooth Muscle	Colon

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