Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11822987	0.83[YRI][hapmap]
rs11827593	0.84[YRI][hapmap]
rs12226635	1.00[CEU][hapmap]
rs12288157	0.90[EUR][1000 genomes]
rs12417921	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16934136	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16934145	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs34048175	0.97[EUR][1000 genomes]
rs55917084	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56027747	0.93[EUR][1000 genomes]
rs56058349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56213202	0.97[EUR][1000 genomes]
rs56283872	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56296742	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56393905	0.90[EUR][1000 genomes]
rs57156558	0.86[AFR][1000 genomes]
rs58016260	0.86[AFR][1000 genomes]
rs59060762	0.90[EUR][1000 genomes]
rs59834368	0.98[AFR][1000 genomes]
rs60298839	0.98[AFR][1000 genomes]
rs60337653	0.98[AFR][1000 genomes]
rs7110117	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111475	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs8192695	1.00[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17435200-17460600	Weak transcription	Right Atrium	heart
2	chr11:17443800-17462600	Weak transcription	Brain Substantia Nigra	brain
3	chr11:17446400-17460600	Weak transcription	Fetal Intestine Small	intestine
4	chr11:17452800-17459000	Weak transcription	Lung	lung
5	chr11:17453000-17460200	Weak transcription	Gastric	stomach
6	chr11:17454000-17464000	Weak transcription	Brain Anterior Caudate	brain
7	chr11:17454200-17465800	Weak transcription	Brain Angular Gyrus	brain
8	chr11:17456000-17469200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:17456200-17460200	Weak transcription	Fetal Brain Female	brain
10	chr11:17456200-17461000	Weak transcription	Spleen	Spleen
11	chr11:17456600-17460400	Weak transcription	Fetal Lung	lung
12	chr11:17457000-17467200	Weak transcription	Fetal Brain Male	brain
13	chr11:17457200-17459200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:17457200-17465400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr11:17457400-17464600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:17457800-17459000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:17457800-17460400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr11:17458800-17459600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:17458800-17459600	Enhancers	Dnd41	blood
20	chr11:17458800-17462000	Enhancers	Fetal Thymus	thymus

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