Variant report

Variant	rs34048175
Chromosome Location	chr11:17477634-17477635
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12226635	0.80[EUR][1000 genomes]
rs12288157	0.93[EUR][1000 genomes]
rs12417921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12422005	0.97[EUR][1000 genomes]
rs16934136	0.97[EUR][1000 genomes]
rs2883580	1.00[ASN][1000 genomes]
rs55917084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56027747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56058349	0.97[EUR][1000 genomes]
rs56213202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56283872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56296742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56393905	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59060762	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110117	0.97[EUR][1000 genomes]
rs7111475	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8192695	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv897019	chr11:17475443-17499547	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv897020	chr11:17476516-17491386	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17461200-17497400	Weak transcription	Gastric	stomach
2	chr11:17465800-17481600	Weak transcription	Fetal Brain Female	brain
3	chr11:17465800-17496400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:17467400-17478600	Weak transcription	Dnd41	blood
5	chr11:17470200-17482000	Weak transcription	Brain Germinal Matrix	brain
6	chr11:17472400-17489600	Weak transcription	Brain Substantia Nigra	brain
7	chr11:17473600-17478200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:17473800-17478800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:17474000-17482200	Weak transcription	Brain Angular Gyrus	brain
10	chr11:17474000-17485000	Weak transcription	Lung	lung
11	chr11:17474400-17479000	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:17474400-17481800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:17474600-17481800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:17474800-17481800	Weak transcription	Brain Anterior Caudate	brain
15	chr11:17474800-17481800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:17476200-17479000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr11:17476400-17480600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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