Variant report

Variant	rs59060762
Chromosome Location	chr11:17492012-17492013
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12226635	0.87[EUR][1000 genomes]
rs12288157	1.00[EUR][1000 genomes]
rs12417921	0.93[EUR][1000 genomes]
rs12422005	0.90[EUR][1000 genomes]
rs16934136	0.90[EUR][1000 genomes]
rs2883580	1.00[ASN][1000 genomes]
rs34048175	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55917084	0.90[EUR][1000 genomes]
rs56027747	0.97[EUR][1000 genomes]
rs56058349	0.90[EUR][1000 genomes]
rs56213202	0.93[EUR][1000 genomes]
rs56283872	0.90[EUR][1000 genomes]
rs56296742	0.93[EUR][1000 genomes]
rs56393905	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60229062	0.83[AFR][1000 genomes]
rs7110117	0.90[EUR][1000 genomes]
rs7111475	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8192695	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv897019	chr11:17475443-17499547	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv897022	chr11:17478157-17496516	Enhancers Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17461200-17497400	Weak transcription	Gastric	stomach
2	chr11:17465800-17496400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:17480200-17494000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:17480200-17494200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:17480200-17494800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:17481800-17495200	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:17483800-17493400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:17486000-17492600	Weak transcription	Spleen	Spleen
9	chr11:17487200-17494200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:17488600-17492800	Strong transcription	Pancreatic Islets	Pancreatic Islet
11	chr11:17489600-17493200	Strong transcription	Brain Anterior Caudate	brain
12	chr11:17490200-17496200	Weak transcription	Brain Germinal Matrix	brain
13	chr11:17490800-17493200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:17492000-17495200	Weak transcription	Brain Angular Gyrus	brain
15	chr11:17492000-17497200	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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