Variant report

Variant	rs12423046
Chromosome Location	chr12:26082580-26082581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1167634	0.84[ASN][1000 genomes]
rs12426577	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12815996	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12824437	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12828333	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12829418	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1691897	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2634177	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28609105	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34018514	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34088076	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34156146	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34292473	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34451983	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34590162	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35586319	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35594340	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67602619	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706513	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs853654	0.89[EUR][1000 genomes]
rs903641	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1035319	chr12:26020667-26097148	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv976730	chr12:26082055-26086201	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26079600-26082800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:26081400-26082800	Enhancers	NHDF-Ad	bronchial
3	chr12:26081600-26082600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr12:26081600-26082800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr12:26081600-26082800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr12:26081600-26082800	Enhancers	Hela-S3	cervix
7	chr12:26081600-26082800	Enhancers	Osteobl	bone
8	chr12:26081600-26083000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr12:26081800-26082600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:26081800-26082600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr12:26081800-26082600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr12:26081800-26082600	Enhancers	Brain Hippocampus Middle	brain
13	chr12:26082200-26082600	Enhancers	Brain Substantia Nigra	brain
14	chr12:26082400-26082800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links