Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1167634	0.84[ASN][1000 genomes]
rs12423046	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12426577	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12815996	0.82[ASN][1000 genomes]
rs12824437	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12828333	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12829418	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1691897	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2634177	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28609105	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34088076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34156146	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34292473	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34451983	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34590162	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35586319	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35594340	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67602619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706513	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs853654	0.89[EUR][1000 genomes]
rs903641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1035319	chr12:26020667-26097148	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26076800-26080000	Enhancers	HUVEC	blood vessel
2	chr12:26078000-26081600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr12:26078400-26080200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:26078400-26081600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:26078400-26081600	Weak transcription	Hela-S3	cervix
6	chr12:26079400-26080000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr12:26079600-26079800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr12:26079600-26080000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr12:26079600-26080000	Enhancers	NHDF-Ad	bronchial
10	chr12:26079600-26080000	Enhancers	Osteobl	bone
11	chr12:26079600-26082800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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