Variant report

Variant	rs34590162
Chromosome Location	chr12:26090514-26090515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26088715..26091033-chr12:26109828..26112264,2	MCF-7	breast:
2	chr12:26088641..26091375-chr12:26093087..26096585,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000246695	Chromatin interaction
ENSG00000123094	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1167547	0.84[ASN][1000 genomes]
rs12316290	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12423046	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12426577	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12815996	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12824437	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12828333	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12829418	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1691897	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2634177	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28609105	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34018514	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34088076	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34156146	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34292473	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34451983	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34698110	0.86[ASN][1000 genomes]
rs35586319	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35594340	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67602619	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs706513	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs706516	0.86[ASN][1000 genomes]
rs853654	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs903641	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1035319	chr12:26020667-26097148	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26085400-26110600	Weak transcription	Aorta	Aorta
2	chr12:26086800-26095000	Weak transcription	NHDF-Ad	bronchial
3	chr12:26086800-26110600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:26088600-26090600	Enhancers	Brain Anterior Caudate	brain
5	chr12:26088600-26091200	Enhancers	Fetal Kidney	kidney
6	chr12:26089000-26090800	Enhancers	Brain Cingulate Gyrus	brain
7	chr12:26090000-26090800	Enhancers	Fetal Lung	lung
8	chr12:26090200-26092000	Weak transcription	Ovary	ovary
9	chr12:26090200-26110200	Weak transcription	Brain Substantia Nigra	brain
10	chr12:26090400-26090800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr12:26090400-26107800	Weak transcription	Brain Hippocampus Middle	brain

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