Variant report

Variant	rs12424164
Chromosome Location	chr12:104064696-104064697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17034333	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17034363	0.90[JPT][hapmap]
rs59772330	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7977903	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv865	chr12:104030102-104074864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv560038	chr12:104053420-104092996	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv524064	chr12:104061597-104065846	Bivalent Enhancer Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104063000-104064800	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr12:104063000-104067400	Weak transcription	Spleen	Spleen
3	chr12:104063200-104064800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr12:104063200-104064800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr12:104063400-104064800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr12:104063600-104064800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr12:104063600-104064800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr12:104064000-104064800	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr12:104064000-104072000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr12:104064400-104064800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr12:104064400-104065800	Weak transcription	Fetal Intestine Large	intestine
12	chr12:104064400-104067400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr12:104064400-104071000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:104064600-104071200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links