Variant report

Variant	rs17034363
Chromosome Location	chr12:104071956-104071957
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12422614	1.00[AFR][1000 genomes]
rs12424164	0.90[JPT][hapmap]
rs17034333	0.90[JPT][hapmap]
rs17034372	0.90[CHB][hapmap]
rs17034394	0.92[CHB][hapmap]
rs1991437	0.92[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3752877	1.00[AFR][1000 genomes]
rs56939481	0.89[EUR][1000 genomes]
rs7138431	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv865	chr12:104030102-104074864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv560038	chr12:104053420-104092996	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104064000-104072000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr12:104065800-104075200	Enhancers	Fetal Intestine Large	intestine
3	chr12:104066800-104074600	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr12:104068000-104073800	Weak transcription	Spleen	Spleen
5	chr12:104068400-104073200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr12:104070200-104072400	Enhancers	Fetal Intestine Small	intestine
7	chr12:104070600-104072200	Enhancers	Duodenum Mucosa	Duodenum
8	chr12:104070800-104073600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr12:104071000-104072000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:104071400-104072200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
11	chr12:104071400-104074000	Weak transcription	Fetal Muscle Leg	muscle
12	chr12:104071600-104072000	Weak transcription	Colonic Mucosa	Colon
13	chr12:104071600-104072800	Weak transcription	Fetal Brain Male	brain
14	chr12:104071600-104074400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr12:104071600-104074400	Weak transcription	Brain Germinal Matrix	brain
16	chr12:104071800-104072200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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