Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr12:104066407-104067092	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000257766	TF binding region

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17034363	0.89[EUR][1000 genomes]
rs1991437	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv865	chr12:104030102-104074864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv560038	chr12:104053420-104092996	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104063000-104067400	Weak transcription	Spleen	Spleen
2	chr12:104064000-104072000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr12:104064400-104067400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:104064400-104071000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:104064600-104071200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr12:104064800-104067600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:104064800-104070200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr12:104064800-104070400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr12:104065800-104068800	Enhancers	Fetal Intestine Small	intestine
10	chr12:104065800-104075200	Enhancers	Fetal Intestine Large	intestine
11	chr12:104066000-104067600	Enhancers	Duodenum Mucosa	Duodenum
12	chr12:104066000-104068000	Enhancers	Gastric	stomach
13	chr12:104066200-104067800	Enhancers	HMEC	breast
14	chr12:104066200-104068000	Enhancers	Pancreas	Pancrea
15	chr12:104066200-104068200	Enhancers	Stomach Mucosa	stomach
16	chr12:104066600-104070400	Weak transcription	Colonic Mucosa	Colon
17	chr12:104066800-104074600	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr12:104067000-104067400	Enhancers	A549	lung
19	chr12:104067000-104068200	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr12:104067000-104068800	Enhancers	HepG2	liver

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