Variant report

Variant	rs12428757
Chromosome Location	chr13:37920850-37920851
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11147647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11620051	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12427429	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12429410	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1590377	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1590378	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17236051	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17236148	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17827203	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17827411	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17827429	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17827534	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2038732	1.00[AFR][1000 genomes]
rs2038733	1.00[AFR][1000 genomes]
rs2038734	1.00[AFR][1000 genomes]
rs2093820	1.00[AFR][1000 genomes]
rs34265500	1.00[AFR][1000 genomes]
rs34783637	1.00[AFR][1000 genomes]
rs35019156	1.00[AFR][1000 genomes]
rs35789130	1.00[AFR][1000 genomes]
rs36053111	1.00[AFR][1000 genomes]
rs3858863	1.00[AFR][1000 genomes]
rs3940155	1.00[AFR][1000 genomes]
rs4941865	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4943493	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73181009	1.00[AFR][1000 genomes]
rs73181010	1.00[AFR][1000 genomes]
rs73181011	1.00[AFR][1000 genomes]
rs73181015	1.00[AFR][1000 genomes]
rs73181017	1.00[AFR][1000 genomes]
rs73181022	1.00[AFR][1000 genomes]
rs73181034	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73181035	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73181036	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73181037	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73181038	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73181041	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73181044	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9532034	1.00[AFR][1000 genomes]
rs9532035	1.00[AFR][1000 genomes]
rs9532036	0.83[AFR][1000 genomes]
rs9532040	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9532042	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9547801	1.00[AFR][1000 genomes]
rs9547803	1.00[AFR][1000 genomes]
rs9547804	1.00[AFR][1000 genomes]
rs9547805	1.00[AFR][1000 genomes]
rs9547807	1.00[AFR][1000 genomes]
rs9547809	1.00[AFR][1000 genomes]
rs9547810	1.00[AFR][1000 genomes]
rs9547811	1.00[AFR][1000 genomes]
rs9547819	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9547820	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9547821	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9547822	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37918800-37921400	Enhancers	Colon Smooth Muscle	Colon
2	chr13:37920000-37921400	Enhancers	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links