Variant report

Variant	rs17827411
Chromosome Location	chr13:37938450-37938451
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11147647	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11620051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12427429	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12428757	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12429410	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1590377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1590378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17236051	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17236148	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17827203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17827429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17827534	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2038732	0.86[AFR][1000 genomes]
rs2038733	0.86[AFR][1000 genomes]
rs2038734	0.86[AFR][1000 genomes]
rs2093820	0.86[AFR][1000 genomes]
rs34265500	0.86[AFR][1000 genomes]
rs34783637	0.86[AFR][1000 genomes]
rs35019156	0.86[AFR][1000 genomes]
rs35789130	0.86[AFR][1000 genomes]
rs36053111	0.86[AFR][1000 genomes]
rs3858863	0.86[AFR][1000 genomes]
rs3940155	0.86[AFR][1000 genomes]
rs4941865	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4943493	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181009	0.86[AFR][1000 genomes]
rs73181010	0.86[AFR][1000 genomes]
rs73181011	0.86[AFR][1000 genomes]
rs73181015	0.86[AFR][1000 genomes]
rs73181017	0.86[AFR][1000 genomes]
rs73181022	0.86[AFR][1000 genomes]
rs73181034	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73181036	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181037	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181038	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181041	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73181044	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9532034	0.86[AFR][1000 genomes]
rs9532035	0.86[AFR][1000 genomes]
rs9532040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9532042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547801	0.86[AFR][1000 genomes]
rs9547803	0.86[AFR][1000 genomes]
rs9547804	0.86[AFR][1000 genomes]
rs9547805	0.86[AFR][1000 genomes]
rs9547807	0.86[AFR][1000 genomes]
rs9547809	0.86[AFR][1000 genomes]
rs9547810	0.86[AFR][1000 genomes]
rs9547811	0.86[AFR][1000 genomes]
rs9547819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37935400-37938800	Weak transcription	HSMM	muscle
2	chr13:37936000-37939400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr13:37936000-37939800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:37936200-37940200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr13:37936200-37940400	Weak transcription	Osteobl	bone
6	chr13:37937400-37941400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr13:37937800-37939200	Enhancers	NHDF-Ad	bronchial
8	chr13:37938000-37938600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links