Variant report

Variant	rs9532040
Chromosome Location	chr13:37931862-37931863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11147647	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11620051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12427429	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12428757	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12429410	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1590377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1590378	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17236051	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17236148	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17827203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17827411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17827429	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17827534	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4941865	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4943493	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181035	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73181036	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181037	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181038	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181041	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73181044	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9532042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547819	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547820	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37930400-37934600	Weak transcription	HSMM	muscle
2	chr13:37931400-37932000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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