Variant report

Variant	rs12432108
Chromosome Location	chr14:84844954-84844955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10132716	0.82[ASN][1000 genomes]
rs12434928	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12435926	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12436244	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12880081	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12880837	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12891609	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12892327	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12893690	0.89[ASN][1000 genomes]
rs12895750	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12898135	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3924098	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3924099	0.89[ASN][1000 genomes]
rs4635264	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4904174	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7141228	0.82[ASN][1000 genomes]
rs7141801	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7147801	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7159902	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8008906	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8012447	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8012777	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832845	chr14:84726378-84900199	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3432360	chr14:84844449-84846347	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84842200-84845600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links