Variant report
| Variant | rs12893690 |
|---|---|
| Chromosome Location | chr14:84876839-84876840 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:84876329..84877076-chr17:8942754..8943503,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10132716 | 0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12432108 | 0.89[ASN][1000 genomes] |
| rs12434928 | 0.94[ASN][1000 genomes] |
| rs12435926 | 0.97[ASN][1000 genomes] |
| rs12436244 | 0.83[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12880081 | 0.83[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12880837 | 0.98[ASN][1000 genomes] |
| rs12891609 | 0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12892327 | 0.97[ASN][1000 genomes] |
| rs12895750 | 0.83[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12898135 | 0.82[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3924098 | 0.99[ASN][1000 genomes] |
| rs3924099 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4259973 | 0.84[EUR][1000 genomes] |
| rs4635264 | 0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4904174 | 0.95[ASN][1000 genomes] |
| rs7141228 | 0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7141801 | 0.83[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7147801 | 0.83[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7148700 | 0.84[EUR][1000 genomes] |
| rs7159902 | 0.84[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7160613 | 0.80[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs8008906 | 0.95[ASN][1000 genomes] |
| rs8012447 | 0.94[ASN][1000 genomes] |
| rs8012777 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832845 | chr14:84726378-84900199 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | esv2751288 | chr14:84815330-85704047 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:84876600-84878000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
