Variant report

Variant	rs12432833
Chromosome Location	chr14:79151186-79151187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11159377	0.81[CEU][hapmap];0.85[MEX][hapmap]
rs11159378	0.81[CEU][hapmap]
rs11628562	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs11845056	0.81[CEU][hapmap]
rs11845058	0.81[CEU][hapmap]
rs12432585	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12434689	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs12436078	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17108125	0.81[CEU][hapmap]
rs17108128	0.81[CEU][hapmap]
rs1863030	0.85[MEX][hapmap]
rs2081340	0.81[CEU][hapmap]
rs7143966	0.81[CEU][hapmap];0.85[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8013958	0.81[CEU][hapmap]
rs8018600	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs970465	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12432833	ALKBH1	cis	parietal	SCAN
rs12432833	FCF1	cis	parietal	SCAN
rs12432833	C14orf174	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79150800-79154000	Weak transcription	Brain Germinal Matrix	brain
2	chr14:79151000-79154200	Weak transcription	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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