Variant report

Variant	rs2081340
Chromosome Location	chr14:79176427-79176428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr14:79176242-79176514	HepG2	liver:	n/a	n/a
2	POLR2A	chr14:79175960-79176527	H1-neurons	neurons:	n/a	n/a
3	CEBPB	chr14:79176276-79176487	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000258874	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10150558	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11159377	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.82[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11159378	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1158079	0.82[CHB][hapmap]
rs1158080	0.82[CHB][hapmap]
rs11628562	0.90[CEU][hapmap]
rs11845056	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11845058	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12101009	0.90[CHB][hapmap]
rs12432000	0.90[CHB][hapmap];0.85[MEX][hapmap];0.82[TSI][hapmap]
rs12432585	0.81[CEU][hapmap]
rs12432833	0.81[CEU][hapmap]
rs12434689	1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17108079	0.82[CHB][hapmap]
rs17108083	0.82[CHB][hapmap]
rs17108125	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17108128	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1863030	0.90[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.82[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55834264	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57125846	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7143785	0.82[CHB][hapmap]
rs7143966	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7158798	0.82[CHB][hapmap]
rs72685424	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8013958	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs970465	1.00[CEU][hapmap];0.90[CHB][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2081340	C14orf174	cis	parietal	SCAN
rs2081340	FCF1	cis	parietal	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79165000-79176800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr14:79165000-79181000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:79170800-79176600	Weak transcription	Brain Hippocampus Middle	brain
4	chr14:79175000-79177600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:79175600-79177000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr14:79175600-79177200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:79175600-79177200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr14:79175800-79176600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr14:79175800-79176600	Enhancers	Brain Anterior Caudate	brain
10	chr14:79175800-79176800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:79175800-79177200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:79175800-79177200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr14:79175800-79178000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr14:79176000-79189000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:79176200-79176600	Enhancers	Brain Substantia Nigra	brain
16	chr14:79176200-79177000	Enhancers	Brain Angular Gyrus	brain
17	chr14:79176200-79177000	Weak transcription	Fetal Kidney	kidney
18	chr14:79176200-79177200	Enhancers	Brain Germinal Matrix	brain
19	chr14:79176400-79177000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr14:79176400-79177000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr14:79176400-79177000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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