Variant report

Variant	rs12101009
Chromosome Location	chr14:79189056-79189057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11159377	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs11159378	1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs11845056	1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs11845058	1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs12432000	1.00[CHB][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]
rs12434689	0.89[CHB][hapmap]
rs17108125	1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs17108128	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1863030	1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs2081340	0.90[CHB][hapmap]
rs55834264	0.97[ASN][1000 genomes]
rs72685424	0.87[ASN][1000 genomes]
rs8005048	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008702	0.81[CHB][hapmap]
rs8013671	0.81[CHB][hapmap]
rs8013958	1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs970465	1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79187200-79190000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:79187400-79190000	Enhancers	Brain Germinal Matrix	brain
3	chr14:79187600-79189200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:79187600-79190000	Enhancers	Brain Hippocampus Middle	brain
5	chr14:79187600-79192400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:79187800-79189400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr14:79188400-79189200	Enhancers	Brain Cingulate Gyrus	brain
8	chr14:79188400-79189200	Enhancers	Brain Substantia Nigra	brain
9	chr14:79188400-79189600	Enhancers	Brain Angular Gyrus	brain
10	chr14:79188600-79189600	Enhancers	Brain Anterior Caudate	brain
11	chr14:79188600-79190000	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr14:79188800-79191200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr14:79189000-79189400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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