Variant report

Variant	rs8013671
Chromosome Location	chr14:79186485-79186486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:79181041..79183502-chr14:79185173..79187050,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10148134	0.83[GIH][hapmap]
rs11159377	0.81[CHB][hapmap]
rs11159378	0.81[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs1158079	0.91[CHB][hapmap]
rs1158080	0.91[CHB][hapmap];0.81[GIH][hapmap]
rs11845056	0.81[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs11845058	0.81[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs12101009	0.81[CHB][hapmap]
rs12432000	0.81[CHB][hapmap]
rs17108079	0.91[CHB][hapmap]
rs17108083	0.91[CHB][hapmap];0.81[GIH][hapmap]
rs17108125	0.81[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs17108128	0.81[CHB][hapmap]
rs1863029	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1863030	0.81[CHB][hapmap]
rs2887858	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7143785	0.91[CHB][hapmap]
rs7158798	0.91[CHB][hapmap]
rs72685424	0.83[ASN][1000 genomes]
rs8008702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012832	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8013958	0.81[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs8020388	1.00[CEU][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs970465	0.81[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs8013671	TMEM90A	cis	cerebellum	SCAN
rs8013671	PGF	cis	cerebellum	SCAN
rs8013671	KIAA1737	cis	parietal	SCAN
rs8013671	C14orf4	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79176000-79189000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:79176600-79188600	Weak transcription	Brain Anterior Caudate	brain
3	chr14:79177000-79188400	Weak transcription	Brain Angular Gyrus	brain
4	chr14:79177200-79187400	Weak transcription	Brain Germinal Matrix	brain
5	chr14:79177200-79188000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:79181600-79188600	Weak transcription	Brain Inferior Temporal Lobe	brain

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