Variant report

Variant	rs2887858
Chromosome Location	chr14:79177166-79177167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10148134	0.83[GIH][hapmap]
rs1158080	0.81[GIH][hapmap]
rs1158081	0.86[CHB][hapmap]
rs17108083	0.81[GIH][hapmap]
rs17108086	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs1863029	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7140803	0.81[AFR][1000 genomes]
rs8008702	1.00[CEU][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8012832	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8013671	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8020388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79165000-79181000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:79175000-79177600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr14:79175600-79177200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:79175600-79177200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:79175800-79177200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:79175800-79177200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:79175800-79178000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:79176000-79189000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:79176200-79177200	Enhancers	Brain Germinal Matrix	brain
10	chr14:79176600-79188600	Weak transcription	Brain Anterior Caudate	brain
11	chr14:79176800-79177400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr14:79177000-79177600	Enhancers	Fetal Kidney	kidney
13	chr14:79177000-79188400	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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